Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033019_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4099788 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5795 | 0.14134877218041517 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4949 | 0.1207135588474331 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5030 | 0.0 | 53.13218 | 1 |
GTATCAA | 9600 | 0.0 | 44.13987 | 1 |
ATCAACG | 11560 | 0.0 | 36.063435 | 3 |
TCAACGC | 11610 | 0.0 | 35.86545 | 4 |
CAACGCA | 11910 | 0.0 | 34.88312 | 5 |
TATCAAC | 12480 | 0.0 | 33.6733 | 2 |
AACGCAG | 12370 | 0.0 | 33.661915 | 6 |
ACGCAGA | 14360 | 0.0 | 28.800701 | 7 |
CGCAGAG | 14570 | 0.0 | 28.22431 | 8 |
GTACATG | 10520 | 0.0 | 27.06224 | 1 |
TACATGG | 10725 | 0.0 | 24.906988 | 2 |
GCAGAGT | 16565 | 0.0 | 24.683266 | 9 |
ATACGCG | 50 | 0.0017598895 | 23.499327 | 86-87 |
ACATGGG | 10945 | 0.0 | 23.31768 | 3 |
AGAGTAC | 15135 | 0.0 | 21.472595 | 10-11 |
GAGTACT | 11305 | 0.0 | 20.74446 | 12-13 |
CAGAGTA | 16120 | 0.0 | 20.204262 | 10-11 |
AGTACTT | 12095 | 0.0 | 19.719791 | 12-13 |
CATGGGG | 8030 | 0.0 | 19.37257 | 4 |
GTACTTT | 12780 | 0.0 | 18.221647 | 14-15 |