Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033018_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2837286 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4626 | 0.16304313347332627 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3687 | 0.1299481264842529 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3560 | 0.0 | 53.221695 | 1 |
GTATCAA | 7275 | 0.0 | 44.11911 | 1 |
ATCAACG | 8165 | 0.0 | 38.681152 | 3 |
TCAACGC | 8185 | 0.0 | 38.528534 | 4 |
CAACGCA | 8410 | 0.0 | 37.66473 | 5 |
AACGCAG | 8810 | 0.0 | 35.954643 | 6 |
TATCAAC | 8965 | 0.0 | 35.524246 | 2 |
TAGCGCG | 75 | 3.2775945E-4 | 31.331947 | 4 |
ACGCAGA | 10395 | 0.0 | 30.427168 | 7 |
CGCAGAG | 10575 | 0.0 | 29.820377 | 8 |
GCAGAGT | 11965 | 0.0 | 26.041851 | 9 |
GTGGTAT | 1995 | 0.0 | 25.751125 | 1 |
GTACATG | 6965 | 0.0 | 25.646654 | 1 |
TACATGG | 7055 | 0.0 | 23.706083 | 2 |
TGGTATC | 1940 | 0.0 | 22.8273 | 2 |
ACATGGG | 7305 | 0.0 | 21.939182 | 3 |
GAGTACT | 8585 | 0.0 | 21.1309 | 12-13 |
AGAGTAC | 11140 | 0.0 | 20.714159 | 10-11 |
CAGAGTA | 11855 | 0.0 | 20.37664 | 10-11 |
ACACCGT | 405 | 0.0 | 19.727175 | 6 |