Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033017_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 693495 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2920 | 0.42105566730834393 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2854 | 0.4115386556500047 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT | 1846 | 0.2661879321408229 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1333 | 0.1922147960691858 | No Hit |
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG | 1065 | 0.15356996085047475 | No Hit |
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCA | 1057 | 0.15241638367976698 | No Hit |
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA | 961 | 0.13857345763127346 | No Hit |
ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT | 957 | 0.13799666904591956 | TruSeq Adapter, Index 3 (95% over 21bp) |
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT | 884 | 0.12747027736321098 | No Hit |
GTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGA | 860 | 0.1240095458510876 | No Hit |
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA | 825 | 0.11896264572924102 | No Hit |
CTCTACAAGGTTTTTTCCTAGTGTCCAAAGAGCTGTTCCTCTTTGGACTA | 764 | 0.1101666198025941 | No Hit |
GTTATATGTTTGGGATTTTTTAGGTAGTGGGTGTTGAGCTTGAACGCTTT | 748 | 0.10785946546117851 | No Hit |
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATAT | 721 | 0.10396614251003973 | No Hit |
GTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGT | 717 | 0.10338935392468582 | No Hit |
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA | 702 | 0.10122639672960872 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1855 | 0.0 | 58.939735 | 1 |
GTATAAC | 40 | 7.903749E-6 | 58.907978 | 1 |
TATAACG | 25 | 0.005190201 | 56.523052 | 2 |
GGACCGT | 45 | 1.6138387E-5 | 52.21918 | 6 |
AACACGT | 45 | 0.001013968 | 41.775345 | 4 |
GTATCAA | 3405 | 0.0 | 37.78415 | 1 |
CAACGAG | 50 | 0.0016792625 | 37.701107 | 1 |
GCTCTAG | 50 | 0.0016792625 | 37.701107 | 1 |
AACGAGA | 55 | 0.0026873944 | 34.256397 | 2 |
GAGTTAC | 100 | 1.4107372E-6 | 32.898083 | 7 |
CTTCGTA | 60 | 0.004105532 | 31.41759 | 1 |
GTACATT | 30 | 0.0041624624 | 31.331509 | 14-15 |
TATAAGG | 60 | 0.0041610403 | 31.331509 | 3 |
AAATACG | 200 | 0.0 | 30.54822 | 5 |
ATCAACG | 4310 | 0.0 | 29.55048 | 3 |
CAACGCA | 4350 | 0.0 | 29.386793 | 5 |
TCAACGC | 4350 | 0.0 | 29.386793 | 4 |
ACTACGC | 80 | 4.780581E-4 | 29.37329 | 8 |
TAACTCG | 65 | 0.006154259 | 28.92139 | 5 |
ATGGGAC | 115 | 4.195139E-6 | 28.607029 | 5 |