FastQCFastQC Report
Wed 25 May 2016
SRR1033016_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1033016_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168689
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18951.1233690400678171No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATAGA301.3672705E-462.6714134
GAACATA502.9970784E-547.003563
ACTGGTC555.2339004E-542.768588
CGCAGAA608.788127E-539.1696362
GCAGTGT500.001697277137.6028483
GGAATCA1650.037.0331081
ACAACAC2900.035.6578755
CTACAGA550.002709456734.1844061
CCTAATT352.1807691E-433.5739740-41
TGTAGAG702.1761612E-433.573972
GGAAAAC600.00414946431.3357077
GAATCAA2000.030.5523152
CTACACT804.7616728E-429.3772264
AGAACAA1452.6298949E-829.1746232
CCATGCA650.006110546628.951049
GAGAACA2600.028.9252681
CAACACA5700.028.037216
AACAACA4400.027.7748324
GAACAAA2900.027.5538121
AACGGTA350.008824062526.85917918-19