Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033016_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 168689 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1895 | 1.1233690400678171 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATAGA | 30 | 1.3672705E-4 | 62.671413 | 4 |
GAACATA | 50 | 2.9970784E-5 | 47.00356 | 3 |
ACTGGTC | 55 | 5.2339004E-5 | 42.76858 | 8 |
CGCAGAA | 60 | 8.788127E-5 | 39.169636 | 2 |
GCAGTGT | 50 | 0.0016972771 | 37.602848 | 3 |
GGAATCA | 165 | 0.0 | 37.033108 | 1 |
ACAACAC | 290 | 0.0 | 35.657875 | 5 |
CTACAGA | 55 | 0.0027094567 | 34.184406 | 1 |
CCTAATT | 35 | 2.1807691E-4 | 33.57397 | 40-41 |
TGTAGAG | 70 | 2.1761612E-4 | 33.57397 | 2 |
GGAAAAC | 60 | 0.004149464 | 31.335707 | 7 |
GAATCAA | 200 | 0.0 | 30.552315 | 2 |
CTACACT | 80 | 4.7616728E-4 | 29.377226 | 4 |
AGAACAA | 145 | 2.6298949E-8 | 29.174623 | 2 |
CCATGCA | 65 | 0.0061105466 | 28.95104 | 9 |
GAGAACA | 260 | 0.0 | 28.925268 | 1 |
CAACACA | 570 | 0.0 | 28.03721 | 6 |
AACAACA | 440 | 0.0 | 27.774832 | 4 |
GAACAAA | 290 | 0.0 | 27.553812 | 1 |
AACGGTA | 35 | 0.0088240625 | 26.859179 | 18-19 |