Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033012_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3451414 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6115 | 0.1771737612468397 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4782 | 0.13855190944928658 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4620 | 0.0 | 53.360428 | 1 |
GTATCAA | 8785 | 0.0 | 44.373466 | 1 |
TCAACGC | 10475 | 0.0 | 36.92603 | 4 |
ATCAACG | 10605 | 0.0 | 36.38527 | 3 |
CAACGCA | 10815 | 0.0 | 35.7217 | 5 |
AACGCAG | 11355 | 0.0 | 34.02242 | 6 |
TATCAAC | 11380 | 0.0 | 33.908768 | 2 |
ACGCAGA | 13275 | 0.0 | 28.995451 | 7 |
CGCAGAG | 13515 | 0.0 | 28.445776 | 8 |
GTACATG | 9745 | 0.0 | 27.619377 | 1 |
TACATGG | 9850 | 0.0 | 25.925875 | 2 |
GCAGAGT | 15065 | 0.0 | 25.238289 | 9 |
ACATGGG | 10045 | 0.0 | 24.610981 | 3 |
GAGTACT | 10140 | 0.0 | 21.945726 | 12-13 |
AGAGTAC | 13565 | 0.0 | 21.411602 | 10-11 |
CAGAGTA | 14490 | 0.0 | 20.985361 | 10-11 |
CATGGGG | 7120 | 0.0 | 20.925032 | 4 |
ATACCGC | 230 | 1.01053956E-7 | 20.433968 | 6 |
GTGGTAT | 2270 | 0.0 | 19.934484 | 1 |
AGTACTT | 10900 | 0.0 | 19.488565 | 12-13 |