Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033011_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 270002 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1222 | 0.45258924007970314 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 515 | 0.1907393278568307 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 345 | 0.12777683128273123 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCCCACG | 30 | 1.3714745E-4 | 62.64627 | 2 |
CGTCAAG | 30 | 1.3714745E-4 | 62.64627 | 7 |
GTGTAAT | 40 | 5.6676794E-4 | 47.002132 | 1 |
ACGTCAC | 50 | 0.0017024386 | 37.587765 | 5 |
GCACCTA | 25 | 0.0017055012 | 37.580795 | 54-55 |
CAACGTA | 35 | 2.1651125E-4 | 33.619717 | 22-23 |
CCTAAGC | 95 | 3.7405895E-5 | 29.685558 | 1 |
CTCTAAA | 80 | 4.770027E-4 | 29.376333 | 1 |
GGGTATT | 65 | 0.006155713 | 28.913666 | 6 |
CGTATCA | 50 | 0.0017665132 | 28.180374 | 94 |
GATATGC | 105 | 7.417304E-5 | 26.848404 | 6 |
TCACGTA | 70 | 0.008838268 | 26.848402 | 2 |
GTATCAT | 90 | 9.5374236E-4 | 26.092937 | 94 |
GTACAAA | 205 | 1.0713848E-9 | 25.220657 | 1 |
ACTATGG | 95 | 0.0012932315 | 24.765522 | 8 |
GCCGTAT | 95 | 2.0340212E-4 | 24.719627 | 94 |
GGTTATA | 115 | 1.3729704E-4 | 24.522852 | 1 |
GTACATG | 1405 | 0.0 | 24.086502 | 1 |
TATGCCT | 120 | 1.8186243E-4 | 23.527245 | 8 |
GTGCTAC | 120 | 1.8324074E-4 | 23.501064 | 1 |