Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033005_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4513405 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11384 | 0.2522264232879611 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8548 | 0.1893913796789785 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4759 | 0.1054414571703625 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7435 | 0.0 | 51.94134 | 1 |
GTATCAA | 13580 | 0.0 | 43.210075 | 1 |
TCAACGC | 16495 | 0.0 | 35.3135 | 4 |
ATCAACG | 16530 | 0.0 | 35.153725 | 3 |
CAACGCA | 16885 | 0.0 | 34.550514 | 5 |
TATCAAC | 17175 | 0.0 | 33.888336 | 2 |
AACGCAG | 17220 | 0.0 | 33.796024 | 6 |
ACGCAGA | 19830 | 0.0 | 29.180464 | 7 |
CGCAGAG | 20535 | 0.0 | 28.017975 | 8 |
GTACATG | 15875 | 0.0 | 26.427742 | 1 |
GCAGAGT | 22390 | 0.0 | 25.490147 | 9 |
TACATGG | 16095 | 0.0 | 25.199593 | 2 |
ACATGGG | 16325 | 0.0 | 23.835793 | 3 |
GAGTACT | 14430 | 0.0 | 21.35465 | 12-13 |
CAGAGTA | 22015 | 0.0 | 21.123539 | 10-11 |
AGAGTAC | 20760 | 0.0 | 20.975029 | 10-11 |
CATGGGG | 11150 | 0.0 | 20.4241 | 4 |
GTACTTT | 15485 | 0.0 | 19.687405 | 14-15 |
GTGGTAT | 3415 | 0.0 | 19.672869 | 1 |
AGTACTT | 14870 | 0.0 | 19.553957 | 12-13 |