Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033001_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3046559 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6594 | 0.21644090923563275 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5436 | 0.17843081325521679 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4405 | 0.0 | 54.6069 | 1 |
GTATCAA | 8275 | 0.0 | 43.830128 | 1 |
ATCAACG | 9790 | 0.0 | 36.32492 | 3 |
TCAACGC | 9830 | 0.0 | 36.0814 | 4 |
CAACGCA | 9960 | 0.0 | 35.655346 | 5 |
AACGCAG | 10295 | 0.0 | 34.495117 | 6 |
TATCAAC | 10465 | 0.0 | 34.251072 | 2 |
ACGCAGA | 12120 | 0.0 | 29.18306 | 7 |
CGCAGAG | 12345 | 0.0 | 28.460669 | 8 |
GCAGAGT | 13855 | 0.0 | 25.090302 | 9 |
GTACATG | 9120 | 0.0 | 25.087513 | 1 |
TACATGG | 9385 | 0.0 | 23.456867 | 2 |
ACATGGG | 9525 | 0.0 | 22.025991 | 3 |
GAGTACT | 8990 | 0.0 | 21.42386 | 12-13 |
CAGAGTA | 13425 | 0.0 | 21.11721 | 10-11 |
GTATAGA | 1305 | 0.0 | 20.880503 | 1 |
AGAGTAC | 12565 | 0.0 | 20.525013 | 10-11 |
GTGGTAT | 2130 | 0.0 | 19.630615 | 1 |
AGTACTT | 9305 | 0.0 | 19.360767 | 12-13 |
TATAACG | 245 | 1.9484833E-7 | 19.19961 | 2 |