Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032993_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6454314 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9960 | 0.1543153927745071 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7799 | 0.1208339104667049 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9960 | 0.0 | 44.85587 | 1 |
GTATCAA | 17000 | 0.0 | 40.401413 | 1 |
TCAACGC | 19625 | 0.0 | 34.090595 | 4 |
ATCAACG | 19730 | 0.0 | 33.980705 | 3 |
CAACGCA | 20065 | 0.0 | 33.317257 | 5 |
AACGCAG | 20530 | 0.0 | 32.631626 | 6 |
TATCAAC | 20865 | 0.0 | 32.334938 | 2 |
ACGCAGA | 23800 | 0.0 | 27.969215 | 7 |
CGCAGAG | 24655 | 0.0 | 26.922752 | 8 |
GTACATG | 20475 | 0.0 | 26.707129 | 1 |
TACATGG | 20645 | 0.0 | 25.113543 | 2 |
GCAGAGT | 27500 | 0.0 | 23.845537 | 9 |
ACATGGG | 21415 | 0.0 | 23.244074 | 3 |
GTCGTAC | 575 | 0.0 | 21.242401 | 1 |
GAGTACA | 14985 | 0.0 | 20.346329 | 1 |
GAGTACT | 16600 | 0.0 | 20.13351 | 12-13 |
CAGAGTA | 27140 | 0.0 | 19.722206 | 10-11 |
CATGGGG | 14600 | 0.0 | 19.592749 | 4 |
AGAGTAC | 25020 | 0.0 | 19.581593 | 10-11 |
AGTACTT | 17315 | 0.0 | 18.298359 | 12-13 |