Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032990_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3179138 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5961 | 0.18750365665158292 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4687 | 0.14742990080959054 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4940 | 0.0 | 47.836628 | 1 |
GTATCAA | 9000 | 0.0 | 43.222248 | 1 |
TCAACGC | 10635 | 0.0 | 36.002514 | 4 |
ATCAACG | 10650 | 0.0 | 35.908203 | 3 |
CAACGCA | 10870 | 0.0 | 35.17702 | 5 |
AACGCAG | 11340 | 0.0 | 33.802013 | 6 |
TATCAAC | 11590 | 0.0 | 33.239925 | 2 |
ACGCAGA | 13065 | 0.0 | 29.158607 | 7 |
CGCAGAG | 13275 | 0.0 | 28.5193 | 8 |
GTACATG | 10190 | 0.0 | 27.340097 | 1 |
TACATGG | 10085 | 0.0 | 26.772911 | 2 |
GCAGAGT | 14635 | 0.0 | 25.676037 | 9 |
ACATGGG | 10745 | 0.0 | 24.602694 | 3 |
TAGGTCG | 235 | 5.2204996E-9 | 22.015213 | 5 |
GAGTACT | 9405 | 0.0 | 21.250616 | 12-13 |
GTGGTAT | 2665 | 0.0 | 20.978252 | 1 |
AGAGTAC | 13465 | 0.0 | 20.77333 | 10-11 |
CATGGGG | 6810 | 0.0 | 20.44516 | 4 |
CAGAGTA | 14695 | 0.0 | 20.105356 | 10-11 |
GAGTACA | 7645 | 0.0 | 20.033632 | 1 |