Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032988_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2907205 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2400 | 0.0 | 33.49001 | 1 |
GTATCAA | 3890 | 0.0 | 32.866215 | 1 |
TCAACGC | 3960 | 0.0 | 30.7422 | 4 |
ATCAACG | 4160 | 0.0 | 29.377201 | 3 |
CAACGCA | 4170 | 0.0 | 29.192526 | 5 |
AACGCAG | 4285 | 0.0 | 28.847813 | 6 |
GTACATG | 9365 | 0.0 | 27.454271 | 1 |
TACATGG | 9490 | 0.0 | 25.606764 | 2 |
TATCAAC | 4915 | 0.0 | 25.438326 | 2 |
ACATGGG | 9575 | 0.0 | 24.20129 | 3 |
ACGCAGA | 5350 | 0.0 | 22.7538 | 7 |
CGCAGAG | 5590 | 0.0 | 21.272043 | 8 |
CATGGGG | 6640 | 0.0 | 20.103914 | 4 |
TATACTG | 1725 | 0.0 | 17.983027 | 5 |
GAGTACA | 6940 | 0.0 | 17.677116 | 1 |
GCAGAGT | 6730 | 0.0 | 17.249437 | 9 |
GTCGTAC | 200 | 2.9925763E-4 | 16.451233 | 1 |
CATGGGA | 3255 | 0.0 | 16.173254 | 4 |
GTATTAG | 1455 | 0.0 | 16.152412 | 1 |
GTACGGG | 205 | 3.6120234E-4 | 16.049982 | 1 |