Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032987_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 310913 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7376 | 2.372367832802102 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 1148 | 0.3692351236519541 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 720 | 0.23157603573990154 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 544 | 0.17496856033681446 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 435 | 0.13991052159285716 | No Hit |
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 412 | 0.1325129537844992 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 394 | 0.12672355289100168 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 370 | 0.1190043516996716 | No Hit |
GAAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 346 | 0.11128515050834156 | No Hit |
GAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 327 | 0.10517411623187194 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 322 | 0.10356594931701152 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 321 | 0.10324431593403943 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGTTGCG | 25 | 0.0052301814 | 56.406185 | 7 |
TGCACGA | 55 | 0.002712511 | 34.185566 | 5 |
GAGAACA | 430 | 0.0 | 32.794296 | 1 |
TAGACCA | 60 | 0.0041541196 | 31.336767 | 5 |
CGATGCT | 60 | 0.0041541196 | 31.336767 | 9 |
CCGTATC | 140 | 1.8824721E-8 | 30.212732 | 94 |
GCGCCGG | 125 | 2.3548637E-7 | 30.078457 | 94 |
TACATGA | 220 | 0.0 | 29.91237 | 2 |
ATGCACG | 65 | 0.0061440566 | 28.926247 | 4 |
CTATAAC | 90 | 9.4959117E-4 | 26.113974 | 3 |
ATGGGAC | 110 | 1.01523634E-4 | 25.639174 | 3 |
GTACCCA | 110 | 1.01523634E-4 | 25.639174 | 1 |
TAAACAG | 220 | 2.4301698E-9 | 23.502577 | 5 |
TAACAAC | 180 | 2.148081E-7 | 23.502577 | 1 |
CATGGGG | 605 | 0.0 | 23.30834 | 4 |
CAACACA | 1000 | 0.0 | 23.032524 | 6 |
TACCACA | 225 | 3.1523086E-9 | 22.980297 | 2 |
TGGACAT | 105 | 0.0023302045 | 22.383406 | 5 |
AGGACAG | 105 | 0.0023302045 | 22.383406 | 5 |
GTGTAAG | 105 | 0.0023302045 | 22.383406 | 1 |