Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032983_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1776695 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4143 | 0.23318577471090987 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3387 | 0.19063485854353168 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1853 | 0.10429477203459231 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2535 | 0.0 | 53.748375 | 1 |
GTATCAA | 5035 | 0.0 | 46.656895 | 1 |
ATCAACG | 6110 | 0.0 | 37.561222 | 3 |
TCAACGC | 6100 | 0.0 | 37.5457 | 4 |
CAACGCA | 6360 | 0.0 | 36.006756 | 5 |
TATCAAC | 6510 | 0.0 | 35.470036 | 2 |
AACGCAG | 6605 | 0.0 | 34.81354 | 6 |
ACGCAGA | 7725 | 0.0 | 29.522654 | 7 |
CGCAGAG | 7840 | 0.0 | 29.029627 | 8 |
GTACATG | 5735 | 0.0 | 26.625343 | 1 |
GCAGAGT | 8605 | 0.0 | 26.205156 | 9 |
TACATGG | 5645 | 0.0 | 25.326242 | 2 |
ACATGGG | 5820 | 0.0 | 24.079882 | 3 |
GTGGTAT | 1315 | 0.0 | 21.794624 | 1 |
AGAGTAC | 7915 | 0.0 | 21.396896 | 10-11 |
GAGTACT | 5765 | 0.0 | 21.350025 | 12-13 |
ATGTCGC | 180 | 5.6434183E-6 | 20.899199 | 6 |
GTTCGGA | 135 | 4.0879406E-4 | 20.881554 | 1 |
CAGAGTA | 8400 | 0.0 | 20.860558 | 10-11 |
CTGTCGC | 410 | 0.0 | 20.624577 | 9 |