Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032973_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3788574 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3190 | 0.0 | 34.181965 | 1 |
GTATCAA | 4995 | 0.0 | 33.685825 | 1 |
TCAACGC | 5005 | 0.0 | 31.64649 | 4 |
ATCAACG | 5095 | 0.0 | 31.17972 | 3 |
CAACGCA | 5215 | 0.0 | 30.461855 | 5 |
AACGCAG | 5355 | 0.0 | 29.665073 | 6 |
GTACATG | 10925 | 0.0 | 27.318193 | 1 |
TATCAAC | 6210 | 0.0 | 26.641014 | 2 |
TACATGG | 11065 | 0.0 | 25.740732 | 2 |
ACGCAGA | 6470 | 0.0 | 24.11693 | 7 |
ACATGGG | 11245 | 0.0 | 23.615038 | 3 |
CGCAGAG | 6790 | 0.0 | 22.841908 | 8 |
CCGGTCG | 335 | 1.8189894E-12 | 21.04431 | 9 |
CGCGTAT | 105 | 9.54431E-7 | 20.14241 | 12-13 |
GAGTACA | 7895 | 0.0 | 19.824022 | 1 |
CATGGGG | 7535 | 0.0 | 19.773142 | 4 |
GCAGAGT | 8290 | 0.0 | 18.141937 | 9 |
TAGACCG | 210 | 2.144456E-5 | 17.9046 | 5 |
TATACCG | 320 | 9.447831E-9 | 17.624842 | 5 |
AGTACAT | 8325 | 0.0 | 17.162836 | 2 |