Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032971_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3584312 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 5135 | 0.0 | 40.273205 | 1 |
TCAACGC | 5565 | 0.0 | 34.54316 | 4 |
ATCAACG | 5770 | 0.0 | 33.4788 | 3 |
CAACGCA | 5845 | 0.0 | 32.88794 | 5 |
GGTATCA | 3140 | 0.0 | 32.780712 | 1 |
AACGCAG | 5955 | 0.0 | 32.438286 | 6 |
TATCAAC | 6675 | 0.0 | 29.432621 | 2 |
GTACATG | 12285 | 0.0 | 28.08179 | 1 |
TACATGG | 12170 | 0.0 | 26.647865 | 2 |
ACGCAGA | 7205 | 0.0 | 26.419153 | 7 |
ACATGGG | 12440 | 0.0 | 25.162731 | 3 |
CGCAGAG | 7595 | 0.0 | 24.691244 | 8 |
GAGTACA | 8605 | 0.0 | 20.919523 | 1 |
GCAGAGT | 8910 | 0.0 | 19.939394 | 9 |
CCGATCG | 190 | 9.049951E-6 | 19.789473 | 9 |
CATGGGG | 8780 | 0.0 | 19.64606 | 4 |
CATGGGA | 4240 | 0.0 | 18.73375 | 4 |
AGTACAT | 9040 | 0.0 | 18.50911 | 2 |
TAGCGCG | 130 | 0.00804151 | 18.077175 | 4 |
GTATAAG | 1685 | 0.0 | 17.29401 | 1 |