Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032971_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3584312 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6839 | 0.1908037023562681 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5695 | 0.15888683797615832 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5965 | 0.0 | 50.327854 | 1 |
GTATCAA | 10710 | 0.0 | 42.243008 | 1 |
TCAACGC | 12520 | 0.0 | 35.27822 | 4 |
ATCAACG | 12600 | 0.0 | 35.054234 | 3 |
CAACGCA | 12780 | 0.0 | 34.59442 | 5 |
TATCAAC | 13210 | 0.0 | 33.756 | 2 |
AACGCAG | 13225 | 0.0 | 33.501503 | 6 |
ACGCAGA | 15185 | 0.0 | 28.804813 | 7 |
CGCAGAG | 15610 | 0.0 | 27.899664 | 8 |
GTACATG | 12750 | 0.0 | 26.456491 | 1 |
TACATGG | 12675 | 0.0 | 25.346512 | 2 |
CGCGTAT | 170 | 0.0 | 24.86858 | 12-13 |
GCAGAGT | 17225 | 0.0 | 24.680092 | 9 |
GTGGTAT | 2940 | 0.0 | 23.650066 | 1 |
ACATGGG | 13230 | 0.0 | 23.429932 | 3 |
TGGTATC | 3085 | 0.0 | 21.193617 | 2 |
GAGTACT | 10360 | 0.0 | 21.106552 | 12-13 |
CAGAGTA | 16570 | 0.0 | 20.992296 | 10-11 |
CCGCGTA | 250 | 0.0 | 20.668552 | 10-11 |
ACGACGG | 185 | 7.1426675E-6 | 20.338892 | 6 |