Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032966_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3278724 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6658 | 0.2030668028171935 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5342 | 0.16292923710565452 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6150 | 0.0 | 37.734642 | 1 |
GTATCAA | 10015 | 0.0 | 35.79002 | 1 |
TCAACGC | 11480 | 0.0 | 30.484297 | 4 |
ATCAACG | 11575 | 0.0 | 30.2752 | 3 |
CAACGCA | 11850 | 0.0 | 29.49052 | 5 |
AACGCAG | 12120 | 0.0 | 28.911165 | 6 |
TATCAAC | 12360 | 0.0 | 28.466118 | 2 |
GTACATG | 11120 | 0.0 | 25.938923 | 1 |
ACGCAGA | 14015 | 0.0 | 24.934523 | 7 |
TACATGG | 11235 | 0.0 | 24.701542 | 2 |
CGCAGAG | 14550 | 0.0 | 23.92071 | 8 |
ACATGGG | 11360 | 0.0 | 23.809008 | 3 |
GCAGAGT | 15935 | 0.0 | 21.577824 | 9 |
CCGGTCG | 355 | 0.0 | 21.170946 | 9 |
CATGGGG | 7540 | 0.0 | 20.7739 | 4 |
AGAGTAC | 13105 | 0.0 | 20.32301 | 10-11 |
GAGTACA | 7965 | 0.0 | 19.876162 | 1 |
GAGTACT | 8745 | 0.0 | 19.79337 | 12-13 |
TACGTCG | 270 | 2.5784175E-8 | 19.162003 | 5 |
GTATAGA | 1355 | 0.0 | 18.721596 | 1 |