Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032961_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2844232 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6888 | 0.24217433739582425 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5500 | 0.19337381760700253 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2906 | 0.10217169344835442 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4585 | 0.0 | 52.56802 | 1 |
GTATCAA | 8790 | 0.0 | 43.722805 | 1 |
ATCAACG | 10380 | 0.0 | 36.57765 | 3 |
TCAACGC | 10415 | 0.0 | 36.4999 | 4 |
CAACGCA | 10650 | 0.0 | 35.645935 | 5 |
TATCAAC | 10870 | 0.0 | 35.058025 | 2 |
AACGCAG | 10970 | 0.0 | 34.606125 | 6 |
ACGCAGA | 12545 | 0.0 | 29.922325 | 7 |
CGCAGAG | 12755 | 0.0 | 29.282164 | 8 |
GCAGAGT | 14110 | 0.0 | 26.201283 | 9 |
GTACATG | 9615 | 0.0 | 24.920942 | 1 |
TACATGG | 9450 | 0.0 | 24.245386 | 2 |
ACATGGG | 9675 | 0.0 | 22.46625 | 3 |
GTGGTAT | 2145 | 0.0 | 21.903639 | 1 |
GAGTACT | 9570 | 0.0 | 21.74498 | 12-13 |
CAGAGTA | 13885 | 0.0 | 21.280018 | 10-11 |
AGAGTAC | 13135 | 0.0 | 20.885744 | 10-11 |
GAGTACA | 7060 | 0.0 | 20.829708 | 1 |
AGTACAT | 7155 | 0.0 | 19.660452 | 2 |
GTACTTT | 10665 | 0.0 | 19.556417 | 14-15 |