Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032958_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2894093 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6275 | 0.21682095219469452 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5064 | 0.17497709990660285 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4090 | 0.0 | 52.382866 | 1 |
GTATCAA | 7495 | 0.0 | 43.37927 | 1 |
TCAACGC | 9035 | 0.0 | 35.469105 | 4 |
ATCAACG | 9095 | 0.0 | 35.23511 | 3 |
CAACGCA | 9345 | 0.0 | 34.335125 | 5 |
AACGCAG | 9610 | 0.0 | 33.388317 | 6 |
TATCAAC | 9890 | 0.0 | 32.686554 | 2 |
GTACATG | 10445 | 0.0 | 27.753927 | 1 |
ACGCAGA | 11570 | 0.0 | 27.568132 | 7 |
TACATGG | 10325 | 0.0 | 26.888752 | 2 |
CGCAGAG | 11910 | 0.0 | 26.66263 | 8 |
CGACGCG | 150 | 0.0 | 25.051077 | 90-91 |
ACATGGG | 10500 | 0.0 | 24.96302 | 3 |
TAGACCG | 115 | 1.3685632E-4 | 24.546352 | 5 |
ACACCGT | 575 | 0.0 | 24.546352 | 6 |
GTGGTAT | 2005 | 0.0 | 23.901962 | 1 |
GCAGAGT | 13190 | 0.0 | 23.860535 | 9 |
TACACCG | 570 | 0.0 | 22.285503 | 5 |
TGGTATC | 2015 | 0.0 | 21.017263 | 2 |
CATGGGG | 6935 | 0.0 | 20.695913 | 4 |