Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032952_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2639531 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2605 | 0.0 | 37.709 | 1 |
GTATCAA | 4250 | 0.0 | 32.955948 | 1 |
TCAACGC | 4190 | 0.0 | 32.08178 | 4 |
ATCAACG | 4215 | 0.0 | 32.003006 | 3 |
CAACGCA | 4315 | 0.0 | 31.151823 | 5 |
AACGCAG | 4570 | 0.0 | 29.516436 | 6 |
GTACATG | 9065 | 0.0 | 28.20574 | 1 |
TATCAAC | 5000 | 0.0 | 27.82455 | 2 |
TACATGG | 9110 | 0.0 | 26.725008 | 2 |
ACATGGG | 9210 | 0.0 | 25.36315 | 3 |
ACGCAGA | 5530 | 0.0 | 24.052004 | 7 |
CGCAGAG | 5810 | 0.0 | 22.488405 | 8 |
CATGGGG | 6405 | 0.0 | 21.060524 | 4 |
TACCTGG | 1740 | 0.0 | 19.718779 | 2 |
GCAGAGT | 6600 | 0.0 | 19.297768 | 9 |
GTATAGA | 1140 | 0.0 | 18.552998 | 1 |
GAGTACA | 6380 | 0.0 | 18.196285 | 1 |
GTACCGC | 310 | 6.373739E-9 | 18.193563 | 6 |
TACCGCT | 310 | 1.2616329E-7 | 16.677116 | 7 |
CATGGGA | 3165 | 0.0 | 16.48374 | 4 |