Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032944_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4133638 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8298 | 0.2007432677946158 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6828 | 0.16518137292138307 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6050 | 0.0 | 52.185436 | 1 |
GTATCAA | 11435 | 0.0 | 43.18192 | 1 |
TCAACGC | 13565 | 0.0 | 35.870342 | 4 |
ATCAACG | 13600 | 0.0 | 35.84723 | 3 |
CAACGCA | 13855 | 0.0 | 35.149242 | 5 |
AACGCAG | 14415 | 0.0 | 33.751106 | 6 |
TATCAAC | 14785 | 0.0 | 33.100628 | 2 |
ACGCAGA | 16625 | 0.0 | 29.150227 | 7 |
CGCAGAG | 16905 | 0.0 | 28.583908 | 8 |
GTACATG | 11740 | 0.0 | 27.733234 | 1 |
TACATGG | 11745 | 0.0 | 26.323072 | 2 |
GCAGAGT | 18880 | 0.0 | 25.304123 | 9 |
ACATGGG | 12140 | 0.0 | 24.575668 | 3 |
GTGGTAT | 3125 | 0.0 | 21.6495 | 1 |
AGAGTAC | 17220 | 0.0 | 21.045761 | 10-11 |
GAGTACT | 12955 | 0.0 | 20.994505 | 12-13 |
CAGAGTA | 18370 | 0.0 | 20.661604 | 10-11 |
CATGGGG | 7640 | 0.0 | 20.141376 | 4 |
TGGTATC | 3300 | 0.0 | 19.250591 | 2 |
AGTACTT | 13675 | 0.0 | 19.133408 | 12-13 |