SRR1032943_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1032943_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1456
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CCCCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTC	12	0.8241758241758242	No Hit
GTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCTCTA	12	0.8241758241758242	No Hit
GTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCG	10	0.6868131868131868	No Hit
CCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCC	10	0.6868131868131868	No Hit
ATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAA	7	0.4807692307692308	No Hit
ATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAA	6	0.4120879120879121	No Hit
TGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACT	6	0.4120879120879121	No Hit
AGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCTC	6	0.4120879120879121	No Hit
CTTCAGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTG	6	0.4120879120879121	No Hit
GTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTT	5	0.3434065934065934	No Hit
CCATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGC	5	0.3434065934065934	No Hit
CTCGAAGAGGACGGGGGTAGGAAATCCTCCAGGATCTTAGGAAATTTCAC	5	0.3434065934065934	No Hit
CTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCA	4	0.27472527472527475	No Hit
GTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGC	4	0.27472527472527475	No Hit
CGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGC	4	0.27472527472527475	No Hit
TTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTAC	4	0.27472527472527475	No Hit
CAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCA	4	0.27472527472527475	No Hit
CCCCCAAATGCCACACGCCGCCCCTCTACCGCATGCGAATCTTTGCGCCT	4	0.27472527472527475	No Hit
GAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCAT	3	0.20604395604395606	No Hit
GTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCAGG	3	0.20604395604395606	No Hit
GTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATC	3	0.20604395604395606	No Hit
GTATCAACGCAGAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGGA	3	0.20604395604395606	No Hit
ACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCC	3	0.20604395604395606	No Hit
GTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTT	3	0.20604395604395606	No Hit
GGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCTCT	3	0.20604395604395606	No Hit
TCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTG	2	0.13736263736263737	RNA PCR Primer, Index 46 (96% over 28bp)
GTCTTCATGCAGGAACCACAGTGCCAGATCCCCACAGCTCGTCTCTTCAT	2	0.13736263736263737	No Hit
CGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCC	2	0.13736263736263737	No Hit
TGACTGGGAGATGGCAGTATACCTCAATGGGCAGTGTGTCTCCTGCCAAA	2	0.13736263736263737	No Hit
GATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGA	2	0.13736263736263737	No Hit
GGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGA	2	0.13736263736263737	No Hit
GGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTG	2	0.13736263736263737	No Hit
TTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGA	2	0.13736263736263737	No Hit
GGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGC	2	0.13736263736263737	No Hit
GGTATCAACGCAGAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGG	2	0.13736263736263737	No Hit
GACCTGACCACCGCAGGCGCTGTCACCCAGTGCTACCGAGACATGGGTGC	2	0.13736263736263737	No Hit
GTATCAACGCAGAGTACATGGGAGTCCAACATGGCGGCGCCCAGCGGAGG	2	0.13736263736263737	No Hit
ATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAG	2	0.13736263736263737	No Hit
CATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCT	2	0.13736263736263737	RNA PCR Primer, Index 31 (96% over 27bp)
TTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCATGAAGGCCTCGGGCAC	2	0.13736263736263737	No Hit
CTCCAGGACAGTTCAGGTCCCCAAGCTAACCCCCTACTTCCCAGACAGCT	2	0.13736263736263737	No Hit
GTACACAGGAGGCAAAGTGTTTCACATCATAGACTTCACTTCCAACTCCT	2	0.13736263736263737	No Hit
ACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTC	2	0.13736263736263737	No Hit
CTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCA	2	0.13736263736263737	No Hit
TCTTTGCGCCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTTGTA	2	0.13736263736263737	No Hit
CCTCCCTGTCGGCCCCTGTCTGAGCATCGAATCTCTTGGTGGCGATGGCA	2	0.13736263736263737	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.13736263736263737	No Hit
TCTTGCAGGTGGCTCTTCCTCCACATCACGACTGGGGTCTCGAAGAGGAC	2	0.13736263736263737	No Hit
GGCCAGTGATGTCTCAAAGAGTAGAGGAGCGTCTACTGGTCTTTCAACTC	2	0.13736263736263737	No Hit
CCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTC	2	0.13736263736263737	No Hit
CTCTTCCTCCACATCACGACTGGGGTCTCGAAGAGGACGGGGGTAGGAAA	2	0.13736263736263737	No Hit
TATCAACGCAGAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGGAG	2	0.13736263736263737	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.13736263736263737	No Hit
CTGTCACCCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGAGCC	2	0.13736263736263737	No Hit
TCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTG	2	0.13736263736263737	RNA PCR Primer, Index 31 (96% over 29bp)
TTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTA	2	0.13736263736263737	No Hit
GTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTACTG	2	0.13736263736263737	No Hit
GCCACACGCCGCCCCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTC	2	0.13736263736263737	No Hit
CCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGACTCCCGGAGC	2	0.13736263736263737	No Hit
GATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGA	2	0.13736263736263737	No Hit
ATCATACACTGCGTTCGGGACCAGGAAGTTCACCACTTCAATTCTGTCAA	2	0.13736263736263737	No Hit
CTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCT	2	0.13736263736263737	No Hit
TGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGC	2	0.13736263736263737	No Hit
GGGGTAGGAAATCCTCCAGGATCTTAGGAAATTTCACTCCGCTTCTCCTG	2	0.13736263736263737	No Hit
CATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCT	2	0.13736263736263737	RNA PCR Primer, Index 33 (96% over 27bp)
TGTCCATCTTGCAGGTGGCTCTTCCTCCACATCACGACTGGGGTCTCGAA	2	0.13736263736263737	No Hit
CTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGA	2	0.13736263736263737	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary