Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032942_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5374770 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 9532 | 0.17734712369087421 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8842 | 0.1645093650518999 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7368 | 0.1370849357274823 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 23925 | 0.0 | 29.594559 | 1 |
TACATGG | 23750 | 0.0 | 28.514357 | 2 |
GTATCAA | 26170 | 0.0 | 25.673368 | 1 |
ACATGGG | 25995 | 0.0 | 25.292114 | 3 |
CAACGCA | 29350 | 0.0 | 22.685373 | 5 |
TCAACGC | 29405 | 0.0 | 22.631159 | 4 |
CATGGGG | 17410 | 0.0 | 22.463675 | 4 |
ATCAACG | 29800 | 0.0 | 22.346973 | 3 |
AACGCAG | 30240 | 0.0 | 22.048632 | 6 |
GGTATCA | 19795 | 0.0 | 21.670345 | 1 |
TATCAAC | 31340 | 0.0 | 21.368416 | 2 |
GAGTACA | 16500 | 0.0 | 20.217382 | 1 |
AGAGTAC | 23485 | 0.0 | 20.141155 | 10-11 |
GAGTACT | 13690 | 0.0 | 20.123804 | 12-13 |
ACGCAGA | 33730 | 0.0 | 19.571257 | 7 |
CATGGGA | 6495 | 0.0 | 19.564247 | 4 |
GTACTTT | 14345 | 0.0 | 18.87749 | 14-15 |
CGCAGAG | 34925 | 0.0 | 18.807121 | 8 |
AGTACAT | 17005 | 0.0 | 18.653042 | 2 |
AGTACTT | 13925 | 0.0 | 18.299955 | 12-13 |