Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032938_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3769188 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6864 | 0.18210818881944865 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5572 | 0.14783024884935428 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 12160 | 0.0 | 34.811848 | 1 |
GGTATCA | 7720 | 0.0 | 34.323982 | 1 |
TCAACGC | 13665 | 0.0 | 30.534979 | 4 |
ATCAACG | 13715 | 0.0 | 30.423658 | 3 |
CAACGCA | 13900 | 0.0 | 30.04899 | 5 |
AACGCAG | 14335 | 0.0 | 29.169567 | 6 |
TATCAAC | 14530 | 0.0 | 28.813913 | 2 |
GTACATG | 11705 | 0.0 | 27.29439 | 1 |
TACATGG | 11790 | 0.0 | 26.01427 | 2 |
ACATGGG | 11705 | 0.0 | 25.640879 | 3 |
ACGCAGA | 16535 | 0.0 | 25.287518 | 7 |
CGCAGAG | 16700 | 0.0 | 24.952848 | 8 |
GCAGAGT | 18215 | 0.0 | 22.513956 | 9 |
GAGTACT | 10540 | 0.0 | 21.481638 | 12-13 |
CATGGGG | 7985 | 0.0 | 20.97291 | 4 |
AGAGTAC | 14915 | 0.0 | 20.298344 | 10-11 |
GAGTACA | 8730 | 0.0 | 20.127659 | 1 |
GTACTTT | 11650 | 0.0 | 19.253445 | 14-15 |
GTCGTAC | 300 | 4.26553E-9 | 18.79299 | 1 |
AGTACTT | 11430 | 0.0 | 18.4322 | 12-13 |