Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032936_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2953569 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7311 | 0.24753103787316294 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5902 | 0.199826040969417 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3367 | 0.11399767535479957 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4795 | 0.0 | 52.709858 | 1 |
GTATCAA | 9220 | 0.0 | 44.175995 | 1 |
ATCAACG | 10980 | 0.0 | 36.595135 | 3 |
TCAACGC | 11030 | 0.0 | 36.386593 | 4 |
CAACGCA | 11235 | 0.0 | 35.802776 | 5 |
TATCAAC | 11615 | 0.0 | 34.716568 | 2 |
AACGCAG | 11715 | 0.0 | 34.375984 | 6 |
ACGCAGA | 13550 | 0.0 | 29.71913 | 7 |
CGCAGAG | 13920 | 0.0 | 28.895384 | 8 |
GTACATG | 11090 | 0.0 | 26.518013 | 1 |
GCAGAGT | 15600 | 0.0 | 25.562761 | 9 |
TACATGG | 10890 | 0.0 | 25.491734 | 2 |
ACATGGG | 11365 | 0.0 | 23.349495 | 3 |
GAGTACT | 9510 | 0.0 | 21.70716 | 12-13 |
CAGAGTA | 14970 | 0.0 | 21.257498 | 10-11 |
AGAGTAC | 14125 | 0.0 | 20.883142 | 10-11 |
CATGGGG | 7450 | 0.0 | 20.715023 | 4 |
GTACTTT | 10240 | 0.0 | 19.999132 | 14-15 |
GTGGTAT | 2150 | 0.0 | 19.883879 | 1 |
AGTACTT | 9950 | 0.0 | 19.519878 | 12-13 |