Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032935_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1637287 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4276 | 0.26116374221501787 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3727 | 0.2276326630578512 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1953 | 0.11928269142795367 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3575 | 0.0 | 37.450706 | 1 |
GTATCAA | 5875 | 0.0 | 35.66303 | 1 |
ATCAACG | 6615 | 0.0 | 31.290419 | 3 |
TCAACGC | 6635 | 0.0 | 31.196098 | 4 |
GTACATG | 5425 | 0.0 | 30.654537 | 1 |
CAACGCA | 6755 | 0.0 | 30.638165 | 5 |
TATCAAC | 6940 | 0.0 | 29.960657 | 2 |
AACGCAG | 6955 | 0.0 | 29.757124 | 6 |
TACATGG | 5630 | 0.0 | 28.576317 | 2 |
ACATGGG | 5685 | 0.0 | 26.644892 | 3 |
GTCGTAC | 145 | 8.690222E-7 | 25.9187 | 1 |
ACGCAGA | 8030 | 0.0 | 25.656296 | 7 |
CGCAGAG | 8190 | 0.0 | 25.097645 | 8 |
GCAGAGT | 8985 | 0.0 | 22.793266 | 9 |
CATGGGG | 3750 | 0.0 | 21.074951 | 4 |
GAGTACT | 5505 | 0.0 | 20.776855 | 12-13 |
CATGGGA | 1905 | 0.0 | 20.002235 | 4 |
AGAGTAC | 7555 | 0.0 | 19.58458 | 10-11 |
GTACTTT | 5905 | 0.0 | 19.13081 | 14-15 |
ACACCGT | 375 | 9.094947E-12 | 18.81462 | 6 |