FastQCFastQC Report
Wed 25 May 2016
SRR1032931_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1032931_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1250
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACT151.2No Hit
GTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCTCTA110.88No Hit
TCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTG100.8RNA PCR Primer, Index 33 (96% over 29bp)
CCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCC90.72No Hit
CTTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGG80.64No Hit
GTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGC80.64No Hit
CTTCAGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTG80.64No Hit
CCCCCAAATGCCACACGCCGCCCCTCTACCGCATGCGAATCTTTGCGCCT70.5599999999999999No Hit
GTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCG60.48No Hit
ATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAA50.4No Hit
GTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATC50.4No Hit
GATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGA50.4No Hit
GTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTT50.4No Hit
ACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGG50.4No Hit
CCCCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTC50.4No Hit
CAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCA50.4No Hit
GTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGACTCCC50.4No Hit
GGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGC40.32No Hit
GCGCTATGACTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGG40.32No Hit
CCATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGC40.32No Hit
CTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTGA40.32RNA PCR Primer, Index 33 (96% over 29bp)
CTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCA40.32No Hit
GTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTT40.32No Hit
CTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCTCTACCGCATGCGAA40.32No Hit
TTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTAC40.32No Hit
ACGCAGAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCAC40.32No Hit
ATTTATTATAGGCCAGTGATGTCTCAAAGAGTAGAGGAGCGTCTACTGGT30.24No Hit
GAGCACGCCATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGG30.24No Hit
GGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTG30.24No Hit
CATCACGACTGGGGTCTCGAAGAGGACGGGGGTAGGAAATCCTCCAGGAT30.24No Hit
CTCCAGGACAGTTCAGGTCCCCAAGCTAACCCCCTACTTCCCAGACAGCT30.24No Hit
GTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCATGA30.24No Hit
CCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTC30.24No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.24No Hit
GAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCAT20.16No Hit
GTCTTCATGCAGGAACCACAGTGCCAGATCCCCACAGCTCGTCTCTTCAT20.16No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT20.16No Hit
GGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATT20.16No Hit
GTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCAGG20.16No Hit
ATGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAA20.16No Hit
GTCGAGCGGGGGTTCTTGATGGTTTCATCTACAGACACGATCAGGCACGC20.16No Hit
GTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTG20.16No Hit
CTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGA20.16No Hit
TTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGA20.16No Hit
GTGCCCAGGTTCACAGTGCAGCTTGTGGCTCGTGTCCATCTTGCAGGTGG20.16No Hit
GTACATGGGGTCCTTTCGCTGATGCAAGAGCCTAGTGCGGTGGTGGGAGA20.16No Hit
TTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAAC20.16No Hit
GTTTGTGGCCATGATTACCTTGACATTGACATTCTGATCAAATCCATCCA20.16No Hit
GGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAA20.16No Hit
GCCTGCTGCTGTGGGAGCATCCACAGTCGAGCGGGGGTTCTTGATGGTTT20.16No Hit
GGTATCAACGCAGAGTACATGGGGCCTTTTGCGGGTGGCGGCGAACGCGG20.16No Hit
GAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCC20.16No Hit
GTACACAGGAGGCAAAGTGTTTCACATCATAGACTTCACTTCCAACTCCT20.16No Hit
ACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTC20.16No Hit
GTATGGGACTAGCTGGCGTGTGCGCCCTGAGACGCTCAGCGGGCTATATA20.16No Hit
GTCTCAAAGAGTAGAGGAGCGTCTACTGGTCTTTCAACTCCTTCAGTCTT20.16No Hit
TCCCCAAGCTAACCCCCTACTTCCCAGACAGCTGCTCGTACAGTTTGGGC20.16No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.16No Hit
CCTCATGGGGCTTGACCATTATCACACAGGTGGGGCGCTTGGAGCCTGCG20.16No Hit
CCGGGGCCCTGAGCTCATACTTTTTACGGAAGGACGCCACCTTGAATTTG20.16No Hit
CCCCAGGCCATGCTTGCACTCAGAAGTTTTCTCATGAGGAGATTGCCATG20.16No Hit
CTCCTAACCTGTTGATCTTGTTTTTATGCGTGATGGCTATCTTCTGCCGC20.16No Hit
GTTTGGAGTTCCTGGGGCCTTCACCCCTGGATGTTCCAAGACACACCTGC20.16No Hit
CGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGC20.16No Hit
CTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCAGGGGAGATTGTCT20.16No Hit
TTCCAAGACACACCTGCCAGGGTTTGTGGAGCAGGCTGAGGCTCTGAAGG20.16No Hit
GTCTGGAGATGAGATGACATCTCTGTCAGAGTATGTTTCTCGCATGAAGG20.16No Hit
GCCCCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGT20.16No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers