Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032920_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5114437 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 31271 | 0.6114260474808859 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 15981 | 0.3124684105014882 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 12902 | 0.25226628072650026 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11492 | 0.2246972638435081 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 11083 | 0.21670029369801605 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9806 | 0.191731758549377 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 8848 | 0.1730004690643369 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 7754 | 0.15161004036221387 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 7391 | 0.14451248495191163 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 6398 | 0.12509685816835753 | No Hit |
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA | 5773 | 0.11287654926632198 | No Hit |
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC | 5254 | 0.10272880475407167 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 5236 | 0.10237685985769304 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 22840 | 0.0 | 26.924175 | 1 |
TACATGG | 22910 | 0.0 | 25.406738 | 2 |
ACATGGG | 22810 | 0.0 | 24.569187 | 3 |
GAGTACT | 16600 | 0.0 | 20.826769 | 12-13 |
CATGGGG | 15845 | 0.0 | 20.342422 | 4 |
AGTACTT | 16175 | 0.0 | 19.762234 | 12-13 |
GTACTTT | 17335 | 0.0 | 19.605 | 14-15 |
AGAGTAC | 26680 | 0.0 | 19.410866 | 10-11 |
CATGGGA | 6975 | 0.0 | 18.889399 | 4 |
GAGTACA | 16250 | 0.0 | 18.64684 | 1 |
AGTACAT | 16165 | 0.0 | 17.203472 | 2 |
ACTTTTT | 20620 | 0.0 | 16.606995 | 16-17 |
TATCGTT | 255 | 6.0364437E-6 | 16.605804 | 7 |
CTATACC | 1970 | 0.0 | 16.481138 | 4 |
TACTTTT | 19455 | 0.0 | 16.430435 | 14-15 |
GTATTAG | 2525 | 0.0 | 16.186642 | 1 |
TATACTG | 1990 | 0.0 | 16.077782 | 5 |
GTGTAGA | 2385 | 0.0 | 15.364028 | 1 |
CTTAGAC | 1205 | 0.0 | 15.229368 | 3 |
GTACTAG | 475 | 3.601599E-10 | 14.835306 | 1 |