Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032914_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1872512 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5480 | 0.2926550003417868 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4268 | 0.22792911340488073 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2400 | 0.1281700731423884 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5255 | 0.0 | 31.559538 | 1 |
GTATCAA | 7730 | 0.0 | 30.38919 | 1 |
GTACATG | 5795 | 0.0 | 28.213337 | 1 |
TCAACGC | 8775 | 0.0 | 26.701624 | 4 |
ATCAACG | 8790 | 0.0 | 26.549006 | 3 |
TACATGG | 5940 | 0.0 | 26.534678 | 2 |
CAACGCA | 8950 | 0.0 | 26.281149 | 5 |
AACGCAG | 9105 | 0.0 | 25.885418 | 6 |
TATCAAC | 9195 | 0.0 | 25.430807 | 2 |
ACATGGG | 6075 | 0.0 | 24.938196 | 3 |
TACACCG | 385 | 0.0 | 23.216152 | 5 |
ACGCAGA | 10260 | 0.0 | 22.877876 | 7 |
CGCAGAG | 10430 | 0.0 | 22.504988 | 8 |
ACCGTTC | 275 | 6.002665E-11 | 22.236845 | 8 |
GAGTACT | 6285 | 0.0 | 21.935053 | 12-13 |
CATGGGG | 4105 | 0.0 | 21.433046 | 4 |
GCAGAGT | 11200 | 0.0 | 20.843672 | 9 |
AGAGTAC | 8545 | 0.0 | 20.311325 | 10-11 |
GTACTTT | 6980 | 0.0 | 19.549091 | 14-15 |
TCGACCG | 150 | 8.241946E-4 | 18.817303 | 5 |