Basic Statistics
Measure | Value |
---|---|
Filename | SRR1032913_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1306882 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4129 | 0.31594283187005406 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3240 | 0.24791832774496855 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1895 | 0.14500161452985044 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2185 | 0.0 | 50.53181 | 1 |
GTATCAA | 4175 | 0.0 | 43.889088 | 1 |
ATAACGC | 160 | 0.0 | 41.184933 | 3 |
TATAACG | 165 | 0.0 | 39.9369 | 2 |
ATCAACG | 5125 | 0.0 | 35.634293 | 3 |
TCAACGC | 5175 | 0.0 | 35.199047 | 4 |
CAACGCA | 5185 | 0.0 | 35.124428 | 5 |
TATCAAC | 5345 | 0.0 | 34.255646 | 2 |
AACGCAG | 5420 | 0.0 | 33.775154 | 6 |
GTACCGG | 135 | 1.331864E-8 | 31.322554 | 1 |
ACGCAGA | 6395 | 0.0 | 28.6257 | 7 |
CGCAGAG | 6500 | 0.0 | 28.089808 | 8 |
TAACGCA | 185 | 3.2196112E-10 | 27.986671 | 4 |
TACCTGG | 1350 | 0.0 | 27.19513 | 2 |
GTACCTG | 1385 | 0.0 | 27.138676 | 1 |
GTACATG | 4155 | 0.0 | 26.573286 | 1 |
GTACACG | 145 | 8.677998E-7 | 25.922115 | 1 |
TACATGG | 4110 | 0.0 | 25.767424 | 2 |
GCAGAGT | 7180 | 0.0 | 25.317371 | 9 |
ACATGGG | 4060 | 0.0 | 24.925434 | 3 |