SRR1003865_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1003865_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2613997
Sequences flagged as poor quality	0
Sequence length	121
%GC	43

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

$Per base sequence content$

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	24923	0.9534440934706505	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	18126	0.6934208417224657	No Hit
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC	11424	0.4370318711153839	No Hit
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT	8660	0.331293417704764	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7782	0.2977050088427799	No Hit
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT	6399	0.244797526546511	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5709	0.218401168784815	No Hit
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT	5317	0.20340497712889494	No Hit
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC	4785	0.18305300273871775	No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4480	0.17138504749622896	No Hit
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC	4119	0.1575747791600373	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4055	0.15512642133866258	No Hit
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG	3828	0.1464424021909742	No Hit
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC	3699	0.1415074309572658	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3615	0.13829396131671154	No Hit
GTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAA	3508	0.1342006130841007	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3487	0.13339724567396213	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3404	0.13022203162436682	No Hit
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA	3197	0.12230312429585802	No Hit
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA	2758	0.10550891986486595	No Hit
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA	2665	0.10195114990568083	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACCTGG	4750	65.52764	2
TATAACG	630	62.09966	2
TAACGCA	720	54.257492	4
GTACCTG	6170	51.399223	1
ACCTGGG	6015	50.334602	3
ATAACGC	815	47.933926	3
GTATAAC	1045	42.48674	1
TACACGG	430	41.477646	2
GTACACG	475	41.272835	1
CCTGGGG	3675	38.9247	4
TATCACG	425	33.843243	2
TCACGCA	460	32.471237	4
ACACGGG	580	29.715631	3
CTGGGGG	2890	28.029886	5
GAGTACG	885	28.015875	1
GTCTCGC	855	26.975712	1
TACGCAG	730	26.75712	4
GTACCCG	410	26.720758	1
AGTACGC	805	26.443974	2
TCTGTCG	600	25.83614	8

Summary