Basic Statistics
Measure | Value |
---|---|
Filename | SRR1003806_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2092538 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 14509 | 0.69336853141974 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6065 | 0.28983941988150275 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5214 | 0.24917110226911052 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 4411 | 0.21079664980994373 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 3623 | 0.17313903021115984 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 3530 | 0.1686946664767856 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 3519 | 0.16816898904583813 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 3216 | 0.15368896526610268 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3068 | 0.14661621437699102 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 2951 | 0.14102491806600406 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 2905 | 0.13882663062749637 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 2842 | 0.135815932613888 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 2753 | 0.13156272430894922 | No Hit |
GTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAA | 2510 | 0.11995003197074557 | No Hit |
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA | 2294 | 0.10962763878123122 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 2110 | 0.10083448902720045 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 2695 | 0.0 | 47.60645 | 2 |
ACCTGGG | 2915 | 0.0 | 43.359383 | 3 |
TATAACG | 375 | 0.0 | 40.548943 | 2 |
GTACCTG | 3590 | 0.0 | 36.8145 | 1 |
TAACGCA | 425 | 0.0 | 34.642178 | 4 |
GTACCCG | 180 | 5.456968E-12 | 31.694014 | 1 |
ATAACGC | 455 | 0.0 | 30.284935 | 3 |
CCTGGGG | 2265 | 0.0 | 29.984737 | 4 |
GTATAAC | 765 | 0.0 | 25.479502 | 1 |
ACACGGG | 305 | 0.0 | 23.368534 | 3 |
GTACACG | 270 | 4.0017767E-11 | 22.890121 | 1 |
CTGGGGG | 1310 | 0.0 | 22.47775 | 5 |
TACACGG | 280 | 6.548362E-11 | 22.062063 | 2 |
TCACGCA | 325 | 1.8189894E-12 | 21.919989 | 4 |
TCTAACG | 120 | 0.004754183 | 19.799286 | 2 |
GGACCGT | 170 | 7.966452E-5 | 19.556068 | 6 |
AGTACTT | 7600 | 0.0 | 19.49772 | 12-13 |
GAGTACT | 7390 | 0.0 | 19.344828 | 12-13 |
TATCACG | 350 | 6.366463E-11 | 19.007317 | 2 |
TACCCGG | 300 | 3.7034624E-9 | 19.007317 | 2 |