Basic Statistics
Measure | Value |
---|---|
Filename | SRR1003766_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47338271 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGC | 172911 | 0.3652668260739815 | No Hit |
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCT | 154365 | 0.3260892228193125 | No Hit |
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCAC | 103523 | 0.21868775055176815 | No Hit |
CTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCC | 64457 | 0.13616255650739756 | No Hit |
GGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGAT | 61083 | 0.12903513100425656 | No Hit |
CCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACCT | 60034 | 0.12681916498386686 | No Hit |
GATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTT | 58508 | 0.12359555759862881 | No Hit |
GTTATATGTTTGGGATTTTTTAGGTAGTGGGTGTTGAGCTTGAACGCTTTC | 51624 | 0.109053412618302 | No Hit |
AGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCT | 48916 | 0.10333288260570396 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTTAAG | 22785 | 0.0 | 23.71885 | 1 |
ACGACCG | 23060 | 0.0 | 17.713104 | 17 |
ACGTCAG | 23555 | 0.0 | 17.659184 | 30 |
CGCTACG | 20630 | 0.0 | 17.643097 | 40 |
GCACGTC | 23325 | 0.0 | 17.60127 | 28 |
CACGTCA | 23630 | 0.0 | 17.44065 | 29 |
CTGTCGA | 3805 | 0.0 | 17.310247 | 9 |
TGTTTGA | 129785 | 0.0 | 16.652079 | 2 |
CGTCAGG | 24420 | 0.0 | 16.569569 | 31 |
ACTGTCG | 4455 | 0.0 | 16.550722 | 8 |
GTGTTTG | 131190 | 0.0 | 16.477903 | 1 |
TTGCACG | 25155 | 0.0 | 16.465683 | 26 |
CGAACCA | 13170 | 0.0 | 16.269556 | 24 |
TGCACGT | 25465 | 0.0 | 16.201883 | 27 |
CTAATCG | 13280 | 0.0 | 16.199665 | 19 |
TTTGAGG | 63320 | 0.0 | 16.15827 | 2 |
GCTACGG | 22505 | 0.0 | 16.033365 | 41 |
ATAGCCG | 3865 | 0.0 | 15.993441 | 11 |
TTGAGGG | 39745 | 0.0 | 15.980168 | 3 |
CGGACGA | 26135 | 0.0 | 15.757484 | 14 |