SRR1003760_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1003760_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26046663
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTCTGAGCGGGCTGGCAAGGCAGACCGTAGCTTATCTCGTATGCCGTCTT	1849403	7.100345253439951	Illumina PCR Primer Index 10 (95% over 24bp)
CTTATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGTAGCTTATCTCGT	350525	1.3457578039843339	No Hit
ATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGTAGCTTATCTCGTATG	295697	1.1352586701797462	No Hit
ACACATCTCTGAGCGGGCTGGCAAGGCAGACCGTAGCTTATCTCGTATGCC	229410	0.8807654170516969	No Hit
CATCTCTGAGCGGGCTGGCAAGGCAGACCGTAGCTTATCTCGTATGCCGTC	199353	0.7653686769779299	Illumina PCR Primer Index 10 (95% over 22bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	146638	0.5629819067417581	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122047	0.4685705804232964	No Hit
ATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTG	71770	0.2755439343611886	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55862	0.21446893216225052	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42638	0.16369851293426724	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35408	0.13594063853784266	No Hit
GAGATGTGTATAAGAGACAGACACATCTCTGAGCGGGCTGGCAAGGCAGAC	34996	0.13435886201622066	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34664	0.13308422656675828	No Hit
CCTATGTATTCAGTATGCAATGACCTATAAAGGCCGGGTTTCCCCATTCGG	32444	0.12456106181432916	No Hit
AGCCATAACAGTGCTCTACCCCCGATGGTGATACTTGAGGCACTACCTAAA	30636	0.117619673583522	No Hit
GTACATGGGGGGACAAGCGAATAAGTGCACATGGTGGATGCCTTGGCGATT	26383	0.10129128633483682	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	215785	42.701298	45
GCCGTCT	217560	42.26004	44
TGCCGTC	239825	38.35223	43
ATGCCGT	242860	37.878807	42
TATGCCG	245750	37.556423	41
GCGCAGA	3710	36.982456	1
CTTATAC	56655	33.92852	1
GTATGCC	277690	33.22067	40
TATACAC	60280	33.057144	3
CGTATGC	282670	32.621407	39
TTATACA	65905	30.014206	2
CTCGTAT	313175	29.478786	37
TCTCGTA	315215	29.313292	36
TCGTATG	320005	28.864185	38
GGTATCA	81200	28.752909	1
CCGGAGC	5420	28.509588	26
GACCGGA	6035	27.773235	24
ACCGGAG	5720	27.685678	25
CGGAGCT	5070	27.678682	27
TGCCGGC	1685	26.780941	43