SRR1003759_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1003759_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	96317182
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTCTGAGCGGGCTGGCAAGGCAGACCGGATCAGATCTCGTATGCCGTCTT	2178024	2.261303699686729	Illumina PCR Primer Index 9 (95% over 24bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	892106	0.9262168820512211	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	767038	0.7963667375567529	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	369932	0.38407685141784986	No Hit
CTTATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGGATCAGATCTCGT	303878	0.31549718719968367	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTA	294526	0.30578760080418466	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	266405	0.2765913562545881	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA	246945	0.25638727677892403	No Hit
ATACACATCTCTGAGCGGGCTGGCAAGGCAGACCGGATCAGATCTCGTATG	246616	0.2560456970180045	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209123	0.2171191013458014	No Hit
CATCTCTGAGCGGGCTGGCAAGGCAGACCGGATCAGATCTCGTATGCCGTC	205614	0.21347592997477854	Illumina PCR Primer Index 9 (95% over 22bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	205045	0.2128851734885682	No Hit
ACACATCTCTGAGCGGGCTGGCAAGGCAGACCGGATCAGATCTCGTATGCC	167793	0.1742087927780113	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTA	156187	0.16215902163748935	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAA	124444	0.12920228500871214	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT	112824	0.1171379785592149	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99676	0.10348724695869943	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	262525	42.034966	45
GCCGTCT	263580	41.767864	44
TGCCGTC	287575	38.287304	43
TATGCCG	291395	37.90746	41
ATGCCGT	291025	37.849144	42
CGTATGC	315130	35.009975	39
GTATGCC	323725	34.106644	40
CTCGTAT	345500	31.979359	37
TCGTATG	346145	31.919355	38
TCTCGTA	345590	31.841208	36
GCGCAGA	14025	31.00395	1
AGACCGG	372990	29.60574	23
CAGACCG	375290	29.436361	22
GACCGGA	371925	29.404877	24
ACCGGAT	370355	29.345705	25
CCGGATC	369000	29.344414	26
TGAGCGG	389955	29.278605	5
GCAGACC	380835	29.180143	21
CTGAGCG	391765	29.171585	4
GCGGGCT	392480	29.140568	8