Basic Statistics
Measure | Value |
---|---|
Filename | SRR940222_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3165650 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5146 | 0.16255745265585267 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3888 | 0.12281837853205502 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3030 | 0.0 | 50.48381 | 1 |
GTATCAA | 5685 | 0.0 | 42.449455 | 1 |
TCAACGC | 6720 | 0.0 | 34.707527 | 4 |
ATCAACG | 6820 | 0.0 | 34.33792 | 3 |
CAACGCA | 7065 | 0.0 | 33.07939 | 5 |
TATCAAC | 7300 | 0.0 | 32.535583 | 2 |
AACGCAG | 7345 | 0.0 | 31.883038 | 6 |
ACGCAGA | 8535 | 0.0 | 27.381199 | 7 |
CGCAGAG | 9105 | 0.0 | 25.927078 | 8 |
GTACATG | 8100 | 0.0 | 24.045717 | 1 |
TACATGG | 8570 | 0.0 | 22.392984 | 2 |
GCAGAGT | 10825 | 0.0 | 21.544216 | 9 |
ACATGGG | 8815 | 0.0 | 20.531189 | 3 |
GTGGTAT | 1625 | 0.0 | 19.878996 | 1 |
AGAGTAC | 9605 | 0.0 | 19.780615 | 10-11 |
CAGAGTA | 9955 | 0.0 | 18.918167 | 10-11 |
CATGGGG | 7225 | 0.0 | 18.869287 | 4 |
GAGTACT | 6035 | 0.0 | 18.299244 | 12-13 |
TATAAGC | 1720 | 0.0 | 17.675144 | 3 |
CTATGCG | 190 | 1.8675234E-4 | 17.499336 | 9 |