FastQCFastQC Report
Fri 27 May 2016
SRR940202_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR940202_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17280129
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA165350.046.062261
GTATCAA283550.044.7736741
ATCAACG346500.035.9194563
TCAACGC347550.035.879284
CAACGCA360150.034.5818565
TATCAAC368800.034.0316052
AACGCAG376100.033.203496
ACGCAGA447550.027.7428917
CGCAGAG461150.027.0066478
GTACATG604100.024.0516321
TACATGG616000.023.1895982
ACATGGG627250.022.2203643
GCAGAGT560050.021.9237029
CATGGGG487250.020.7858144
AGAGTAC503950.018.94003510-11
CAGAGTA515150.018.63428710-11
ATGGGGA294650.017.1366485
GAGTACT178850.017.12987112-13
GTCCTAC96300.016.5285381
GCTTATA75300.016.2163851
Produced by FastQC (version 0.11.5)