FastQCFastQC Report
Fri 27 May 2016
SRR940193_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR940193_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11745170
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA105950.052.5605241
GTATCAA203550.046.686561
TCAACGC249500.037.1233634
ATCAACG250850.037.03753
CAACGCA257800.035.946125
TATCAAC265000.035.331412
AACGCAG267250.034.7639276
ACGCAGA317400.029.301077
CGCAGAG328950.028.1711858
GTACATG386100.023.7883911
GCAGAGT390150.023.5572819
TACATGG400850.022.5397362
ACATGGG401650.021.9491213
AGAGTAC353750.020.26807410-11
CATGGGG318650.019.7359164
CAGAGTA369250.019.39798710-11
GAGTACT158250.017.33514812-13
ATGGGGA188500.016.756685
GTCCTAC59500.016.4506571
GTACTTT171000.016.2232514-15
Produced by FastQC (version 0.11.5)