SRR940177_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940177_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1528727
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8878	0.5807446326257075	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6980	0.45658904434866393	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4143	0.27100980096511673	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	1870	0.12232399898739277	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	1846	0.12075406531054925	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	1689	0.11048408250786439	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	1647	0.10773669857338819	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1569	0.10263441412364667	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4210	91.27417	1
GTATCAA	9490	63.844727	1
TATCAAC	13025	46.59799	2
ATCAACG	13060	46.286137	3
TCAACGC	13080	46.215363	4
CAACGCA	13285	45.469463	5
AACGCAG	13605	44.483112	6
TGGTATC	1335	41.046608	2
ACGCAGA	15790	38.3565	7
GTACATG	11990	38.011284	1
CGCAGAG	16065	37.662876	8
TACATGG	12090	37.24485	2
GCAGAGT	16990	35.192165	9
ACATGGG	12425	34.94292	3
GTGGTAT	1675	34.856323	1
CATGGGA	8650	32.428947	4
ATGGGAG	3400	30.106817	5
ATGGGAT	3395	29.625267	5
AGAGTAC	16255	29.024147	10-11
CAGAGTA	16715	28.777092	10-11