SRR940175_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940175_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	252754
Sequences flagged as poor quality	0
Sequence length	125
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5524	2.185524264700064	No Hit
GAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1420	0.5618110890431012	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1388	0.5491505574590314	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	752	0.29752249222564237	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	592	0.23421983430529292	No Hit
GAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	591	0.23382419269329072	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	533	0.21087697919716406	No Hit
CCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGT	403	0.15944356963688014	No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT	389	0.15390458706884955	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	355	0.1404527722607753	No Hit
GAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTG	325	0.1285835239007098	No Hit
TTCTAGGACAATGGGCATAAAGCTATGGTTAGATCCACAAATTTCAGAGC	287	0.11354914264462679	No Hit
GATATAGGCTTACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACT	274	0.10840580168859841	No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	270	0.10682323524058968	No Hit
CTCCCGACCCGGGGAGGAAGTGACGAAAAAAAAAAAAAAAAAAAAAAAAA	260	0.10286681912056782	No Hit
CCCCTATACTATATCAATTTACCAGAACTCTACTCAACTAACTTCATAAT	255	0.10088861106055691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATAGT	90	0.0	85.94287	6
GGTATCA	540	0.0	84.841034	1
CGTCACT	55	1.9845174E-9	75.72588	1
CTAGATA	105	0.0	73.66532	4
TAGTCAA	115	0.0	72.43346	9
GTATCAA	1345	0.0	68.56752	1
GTTATAT	35	9.139467E-5	67.99876	1
GTCACTA	75	3.2196112E-10	63.465508	2
ACAGTAC	30	0.004233041	59.498913	8
CGTCTAG	30	0.004233041	59.498913	1
ACTTAAG	30	0.004233041	59.498913	8
GGAACGA	30	0.004233041	59.498913	2
GATAGTC	130	0.0	59.498913	7
TCACTAC	75	2.3033863E-8	55.53232	3
GTATAGA	55	1.3079127E-5	54.08992	1
GGTACTC	45	3.1664773E-4	52.887924	8
GTTCGAC	80	0.0	52.06155	16-17
TCGACCG	80	0.0	52.06155	18-19
TAGGCAT	35	0.007789822	50.99907	5
CGATCCG	55	1.7644197E-10	48.680927	70-71