Basic Statistics
Measure | Value |
---|---|
Filename | SRR940170_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1732049 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG | 1911 | 0.11033175158439512 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3050 | 0.0 | 62.656136 | 1 |
GTATCAA | 5390 | 0.0 | 59.42264 | 1 |
TCAACGC | 6695 | 0.0 | 46.240635 | 4 |
ATCAACG | 6740 | 0.0 | 46.020233 | 3 |
CAACGCA | 6880 | 0.0 | 44.997242 | 5 |
AACGCAG | 6985 | 0.0 | 43.962124 | 6 |
TATCAAC | 7635 | 0.0 | 41.404156 | 2 |
GTACATG | 14485 | 0.0 | 41.182022 | 1 |
TACATGG | 15030 | 0.0 | 39.292633 | 2 |
ACATGGG | 15235 | 0.0 | 37.280087 | 3 |
ACGCAGA | 8485 | 0.0 | 36.040745 | 7 |
CGCAGAG | 8515 | 0.0 | 35.567493 | 8 |
CATGGGG | 5000 | 0.0 | 33.577633 | 4 |
CATGGGA | 10210 | 0.0 | 33.4118 | 4 |
GCAGAGT | 9560 | 0.0 | 30.559322 | 9 |
GTATAGG | 640 | 0.0 | 29.76655 | 1 |
ATGGGAG | 3900 | 0.0 | 29.156794 | 5 |
ATGGGAT | 4025 | 0.0 | 27.215914 | 5 |
CCGTTGC | 300 | 7.2759576E-12 | 25.783522 | 9 |
CGATACC | 485 | 0.0 | 25.78057 | 118-119 |