SRR940164_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940164_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2609024
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	5100	0.19547539616346954	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	4590	0.1759278565471226	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	4383	0.16799385517342885	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	3917	0.15013276995535493	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	3909	0.1498261418829417	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	3321	0.12728897856056517	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	3248	0.12449099739979394	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	3129	0.11992990482264632	No Hit
CCTCAGACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGG	3124	0.11973826227738803	No Hit
CTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCCCTGGCTGCCTCAACA	2766	0.10601665603689348	No Hit
GTGTAAATTATGTACTGCAAAAATTTTTTTAAATCTTCCGCCTTAATACT	2684	0.10287371829465732	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2310	60.551857	1
GTATCAA	4700	57.748215	1
ATCAACG	5275	50.09839	3
TCAACGC	5275	49.985558	4
CAACGCA	5640	46.961735	5
AACGCAG	5705	46.313473	6
TATCAAC	6090	44.078064	2
GTACATG	13010	38.750534	1
ACGCAGA	6985	37.56375	7
TACATGG	13320	36.998947	2
ACATGGG	12850	36.360497	3
CGCAGAG	7315	35.87258	8
TAAGGTG	1615	34.2747	5
CATGGGG	7150	32.215748	4
AGGTAAG	1470	31.177168	2
GTAAGGT	1675	30.914888	4
CATGGGA	6420	27.627686	4
GCAGAGT	9290	26.965267	9
GGTAAGG	1870	26.41799	3
GTGTAAG	1285	25.475996	1