SRR940137_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940137_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1041217
Sequences flagged as poor quality	0
Sequence length	125
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTCCAGGATGTGCAGAAGCCATCTCAAGATGAATGGGGTAAAACCCAGG	2205	0.21177141748550013	No Hit
GTCCCAGGGTGTGCTTGTCAAAGAGATATTCTGCCATGCCAGCTTCAGGG	2156	0.20706538598582236	No Hit
TCCTGGAAGAGTGCACGGCCCCCGCGATCGTTCTGAAACTCGAGGAGACG	2079	0.19967019362918584	No Hit
CTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCACTTATG	1797	0.17258650214124432	No Hit
TGCATGCACTGCCTCAGTGACCAGTAAAGTCACGTGGCTTTGGGGAAGTC	1691	0.162406107468472	No Hit
GTCTATGTCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTG	1633	0.15683570283620032	No Hit
GTCCAAGACTTGACAGAGGCTCCAGGGCGGTTACAAAGCTGCCTAGTGGC	1489	0.1430057327146983	No Hit
GTACAGAGGCCTCCTAGTCGTGCTTGAGAGTGAGGCGCTCAAAGAGATAC	1279	0.1228370262875078	No Hit
GTTCCAGTAGTGACTGATTCACACTCTTTTCCAAGTGCAGTGCACACTCC	1248	0.11985974105301776	No Hit
CCCCTGGGGCGCGCCAGTCTGCGCTGGTTGTGGCCCCGCCACCCTGCGGA	1236	0.1187072435428926	No Hit
AGTCTGCACCGTCTCTTCGCGGTTAGCTCCTACTCCGGATCAGCCATGAC	1234	0.11851516062453839	No Hit
GAACAGACCCGGGGATTCCCACTGTACTCGCTTCCAGCCGCCTTTACAAG	1231	0.11822703624700712	No Hit
GCTCTGGAGGGCGTAGGCCACTTCTTCCGCGAATTGGCCGAGGAGAAGCG	1043	0.10017124192171277	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1020	63.60007	1
GTATCAA	1795	55.37112	1
GTACATG	5870	45.726685	1
TACATGG	6225	42.44973	2
ATCAACG	2300	42.178493	3
TCAACGC	2350	41.534336	4
ACATGGG	6320	40.399082	3
TATCAAC	2425	40.249767	2
AACGCAG	2440	39.75078	6
CAACGCA	2475	39.43475	5
CATGGGG	3485	37.058533	4
ACTTGAC	710	34.359947	8
CATGGGA	2975	33.8089	4
ACGCAGA	3010	31.824785	7
AGTACAT	4000	30.501778	2
CGCAGAG	3200	29.750683	8
ATGGGGA	1885	29.677471	5
GAGTACA	4450	29.289732	1
ATGGGGG	1785	28.006027	5
ATGGGAG	1495	27.069368	5