Basic Statistics
Measure | Value |
---|---|
Filename | SRR940098_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1892273 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4688 | 0.24774437937866262 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3688 | 0.1948978820709274 | No Hit |
TCCTGGAAGAGTGCACGGCCCCCGCGATCGTTCTGAAACTCGAGGAGACG | 2470 | 0.13053084835010592 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2178 | 0.11509967113624725 | No Hit |
GTCCCAGGGTGTGCTTGTCAAAGAGATATTCTGCCATGCCAGCTTCAGGG | 2165 | 0.1144126666712467 | No Hit |
GTCTATGTCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTG | 2101 | 0.11103049084355164 | No Hit |
CTTCCAGGATGTGCAGAAGCCATCTCAAGATGAATGGGGTAAAACCCAGG | 1978 | 0.10453037167470021 | No Hit |
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG | 1937 | 0.10236366528508307 | No Hit |
CTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCACTTATG | 1912 | 0.10104250285238969 | No Hit |
TGCATGCACTGCCTCAGTGACCAGTAAAGTCACGTGGCTTTGGGGAAGTC | 1907 | 0.10077827036585102 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3295 | 0.0 | 74.675095 | 1 |
GTATCAA | 7200 | 0.0 | 63.30093 | 1 |
ATCAACG | 8985 | 0.0 | 50.38175 | 3 |
TCAACGC | 9085 | 0.0 | 49.82719 | 4 |
TATCAAC | 9230 | 0.0 | 49.23932 | 2 |
CAACGCA | 9310 | 0.0 | 48.58186 | 5 |
AACGCAG | 9645 | 0.0 | 46.95493 | 6 |
CGCAGAG | 11250 | 0.0 | 40.138554 | 8 |
ACGCAGA | 11375 | 0.0 | 39.74978 | 7 |
GTACATG | 9615 | 0.0 | 36.31027 | 1 |
GCAGAGT | 12510 | 0.0 | 35.905598 | 9 |
TACATGG | 10110 | 0.0 | 33.935993 | 2 |
ACATGGG | 10135 | 0.0 | 32.558453 | 3 |
TGGTATC | 1590 | 0.0 | 32.217403 | 2 |
GTGGTAT | 1725 | 0.0 | 31.429207 | 1 |
CATGGGG | 5325 | 0.0 | 29.418047 | 4 |
GAGTACT | 7445 | 0.0 | 28.368484 | 12-13 |
AGAGTAC | 11980 | 0.0 | 27.859837 | 10-11 |
CAGAGTA | 12150 | 0.0 | 27.616926 | 10-11 |
AGTACTT | 7665 | 0.0 | 26.700462 | 12-13 |