Basic Statistics
Measure | Value |
---|---|
Filename | SRR940084_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 770987 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2617 | 0.3394350358696061 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2021 | 0.26213152750954294 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1194 | 0.15486642446630097 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1685 | 0.0 | 62.984535 | 1 |
GTATCAA | 3030 | 0.0 | 55.293938 | 1 |
ATCAACG | 3565 | 0.0 | 46.813515 | 3 |
TCAACGC | 3620 | 0.0 | 46.102257 | 4 |
CAACGCA | 3690 | 0.0 | 45.168995 | 5 |
TATCAAC | 3795 | 0.0 | 44.290447 | 2 |
AACGCAG | 3795 | 0.0 | 43.905014 | 6 |
ACGCAGA | 4365 | 0.0 | 38.164284 | 7 |
CGCAGAG | 4460 | 0.0 | 37.084576 | 8 |
GCAGAGT | 4985 | 0.0 | 33.178978 | 9 |
GTACATG | 3585 | 0.0 | 33.096172 | 1 |
GTGGTAT | 800 | 0.0 | 32.792652 | 1 |
TACATGG | 3520 | 0.0 | 32.51107 | 2 |
ACATGGG | 3585 | 0.0 | 30.591545 | 3 |
GAGTACT | 3150 | 0.0 | 29.558823 | 12-13 |
TGGTATC | 865 | 0.0 | 28.940493 | 2 |
CAGAGTA | 4890 | 0.0 | 27.49685 | 10-11 |
GTACTTT | 3420 | 0.0 | 27.05127 | 14-15 |
CATGGGG | 1920 | 0.0 | 26.07659 | 4 |
AGAGTAC | 4725 | 0.0 | 25.812815 | 10-11 |