SRR940051_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940051_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644196
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8525	1.3233550037566206	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6345	0.9849486802153381	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4257	0.6608237244565319	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1502	0.2331588522747735	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1409	0.2187222522337922	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1144	0.17758570372992072	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1006	0.1561636520562065	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	662	0.10276375513042614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2430	0.0	76.542015	1
GTATCAA	4710	0.0	59.361313	1
TATAACG	65	5.419988E-7	55.00733	2
ATCAACG	6045	0.0	45.740864	3
TATCAAC	6090	0.0	45.402878	2
TCAACGC	6110	0.0	45.254257	4
CAACGCA	6195	0.0	44.677425	5
AACGCAG	6355	0.0	43.63269	6
GTGGTAT	945	0.0	42.897175	1
TAACGCA	85	3.442021E-6	42.06443	4
TGGTATC	970	0.0	39.317955	2
ACGCAGA	7180	0.0	38.447468	7
CGCAGAG	7185	0.0	38.337906	8
ATCACGC	95	7.3890114E-6	37.636593	3
GTGTACG	65	0.0019200643	36.685818	1
GCAGAGT	7630	0.0	35.946	9
TATCACG	110	2.0171246E-5	32.50433	2
ATAACGC	115	2.7333199E-5	31.091099	3
GTATAAC	155	1.9356594E-7	30.76875	1
GAGTACT	5560	0.0	30.6566	12-13