SRR940048_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940048_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	425997
Sequences flagged as poor quality	0
Sequence length	125
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6123	1.4373340657328573	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4535	1.0645614875222127	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2908	0.6826339152623141	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1267	0.29741993488217056	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1107	0.25986098493651366	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	948	0.2225367784280171	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	866	0.20328781658086795	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	576	0.13521221980436482	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	442	0.10375659922487718	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1930	0.0	71.64163	1
TATCACG	50	7.376506E-6	59.59142	2
ATCACGC	50	7.381652E-6	59.58441	3
TAACGCA	90	2.3646862E-11	59.584408	4
GTATCAA	3845	0.0	56.420876	1
TATAACG	115	5.456968E-12	51.818623	2
TAGGACG	35	0.007749346	51.07235	4
TATACCG	35	0.0077782026	51.02436	5
TCACGCA	60	2.1727425E-5	49.653675	4
ATAACGC	120	4.110916E-10	44.68831	3
ATCAACG	4925	0.0	43.554085	3
TCAACGC	4940	0.0	43.421837	4
CAACGCA	5055	0.0	42.51189	5
TATCAAC	5075	0.0	42.389168	2
AACGCAG	5170	0.0	41.78183	6
GCACCGG	75	8.173929E-5	39.671635	6
GGGATCG	65	0.0019385733	36.611378	9
ACGCAGA	5890	0.0	36.46375	7
CGCAGAG	5975	0.0	35.94502	8
GTATCAC	100	1.0486694E-5	35.759056	1