SRR940011_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR940011_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	519058
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6939	1.3368448227365728	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4802	0.9251374605535412	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3456	0.665821545954402	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1697	0.32693841536013313	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1273	0.24525197569443108	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1217	0.234463200644244	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1052	0.2026748455856571	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1050	0.20228953219100756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1835	0.0	72.75991	1
TATCACG	75	3.1832315E-10	63.57217	2
TATAACG	95	0.0	62.73569	2
GTATCAA	3780	0.0	59.92003	1
ATAACGC	110	3.6379788E-12	54.180824	3
ATCACGC	100	4.0781742E-9	47.679127	3
TATCAAC	4850	0.0	46.696053	2
TCAACGC	4925	0.0	46.34799	4
ATCAACG	4910	0.0	46.24681	3
CAACGCA	4960	0.0	46.078842	5
AACGCAG	5150	0.0	44.481552	6
TAACGCA	135	2.7284841E-11	44.14734	4
ACGCAGA	5915	0.0	38.724926	7
CGCAGAG	5940	0.0	38.56194	8
GTGGTAT	730	0.0	37.5591	1
TGGTATC	735	0.0	35.678257	2
GCAGAGT	6420	0.0	35.215443	9
GTATAAC	275	0.0	34.679077	1
TCACGCA	155	1.9388426E-7	30.760727	4
ATACGTC	80	0.0053513865	29.75925	5