SRR939978_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939978_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	814691
Sequences flagged as poor quality	0
Sequence length	125
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA	1979	0.24291418464178444	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC	1846	0.2265889766795018	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1805	0.22155639377383574	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	1680	0.20621315320778064	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1542	0.1892742156228558	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA	1208	0.14827707683035654	No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA	1048	0.128637728905806	No Hit
CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA	896	0.109980348377483	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	817	0.10028342033973617	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	105	6.3027983E-9	45.395805	5
TACACCG	70	5.4064585E-5	42.55857	5
TACCTGG	845	0.0	42.306744	2
GTACATG	5580	0.0	35.563553	1
GTACCTG	1035	0.0	35.122437	1
TACATGG	5560	0.0	34.93477	2
CATGGGG	2585	0.0	33.88222	4
ACCTGGG	1040	0.0	33.801323	3
ACATGGG	5350	0.0	33.076363	3
GTATCAA	6080	0.0	32.442894	1
ACCGCAT	75	0.0039116796	31.730259	8
TAGGACC	1485	0.0	30.894367	4
ATGCCGG	285	0.0	29.225235	9
TAGCCCT	885	0.0	28.949442	4
AATGCCG	290	0.0	28.721352	8
ATCAACG	6920	0.0	28.41338	3
TCAACGC	6985	0.0	28.148975	4
GTGACGA	85	0.00721257	27.997286	6
CAACGCA	7045	0.0	27.909239	5
TATCAAC	7055	0.0	27.869677	2