Basic Statistics
Measure | Value |
---|---|
Filename | SRR939929_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1512616 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3715 | 0.2456009985349884 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2441 | 0.16137605314237058 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 2176 | 0.14385673561564866 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1708 | 0.11291695975713598 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGTCG | 75 | 1.4721463E-6 | 47.595226 | 8 |
CCGTCGT | 110 | 2.0415937E-5 | 32.45129 | 9 |
GGACCGA | 380 | 0.0 | 31.31265 | 6 |
GTATCAA | 7780 | 0.0 | 31.24954 | 1 |
GTACATG | 6320 | 0.0 | 30.077147 | 1 |
TACATGG | 6275 | 0.0 | 29.52728 | 2 |
ATACCGT | 185 | 2.8734576E-8 | 28.943043 | 6 |
GTCCTAC | 1845 | 0.0 | 28.421652 | 1 |
ACATGGG | 6370 | 0.0 | 28.05812 | 3 |
TACCGTC | 215 | 4.0399755E-9 | 27.671644 | 7 |
ATCAACG | 8930 | 0.0 | 26.88626 | 3 |
TCAACGC | 9035 | 0.0 | 26.507862 | 4 |
CAACGCA | 9120 | 0.0 | 26.260801 | 5 |
TATCAAC | 9265 | 0.0 | 26.042723 | 2 |
AACGCAG | 9370 | 0.0 | 25.58815 | 6 |
GGTATCA | 5710 | 0.0 | 25.359064 | 1 |
TAAGGTG | 845 | 0.0 | 24.676758 | 5 |
GTAAGGT | 780 | 0.0 | 24.441744 | 4 |
AGAGTAC | 7880 | 0.0 | 24.235514 | 10-11 |
GTAGGAC | 1920 | 0.0 | 23.582462 | 3 |